Structural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain. Issue 21 (30th September 2014)

• Record Type: Journal Article
• Authors: Lubula, Mulu Y.; Eckenroth, Brian E.; Carlson, Samuel; Poplawski, Amanda; Chruszcz, Maksymilian; Glass, Karen C.
• Is Part Of: FEBS letters. Volume 588:Issue 21(2014)
• Page Start: 3844
• Page End: 3854
• Publication Date: 2014-09-30
• Subjects: AML -- acute myeloid leukemia -- BRPF1 -- bromodomain-PHD finger protein 1 -- CBP -- CREB binding protein -- CD -- circular dichroism -- HAT -- histone acetyltransferase -- HDAC -- histone deacetylase -- hEAF6 -- homolog of Esa1-associated factor 6 -- HOX -- homeobox -- HSCs -- hematopoietic stem cells -- ING5 -- inhibitor of growth 5 -- ITC -- isothermal titration calorimetry -- MD -- molecular dynamic -- MOZ -- monocytic leukemic zinc-finger -- NcoA3 -- nuclear receptor co-activator 3 -- NMR -- nuclear magnetic resonance -- PHD -- plant homeodomain -- PTM -- post-translational modification -- PWWP -- proline-tryptophan-tryptophan-proline -- TIF2 -- transcriptional intermediary binding factor 2 -- ZnF -- zinc finger -- Epigenetics -- Bromodomain-PHD finger protein 1 -- X-ray crystallography -- Site-directed mutagenesis -- Isothermal titration calorimetry -- Circular dichroism; Biochemistry -- Periodicals; Biophysics -- Periodicals; Molecular biology -- Periodicals; Biochimie -- Périodiques; Biochemistry; Biophysics; Molecular biology; Periodicals; 572.05
• DOI: 10.1016/j.febslet.2014.09.028
• Languages: English
• ISSNs: 0014-5793

Abstract

Abstract : Bromodomain‐PHD finger protein 1 (BRPF1) is part of the MOZ HAT complex and contains a unique combination of domains typically found in chromatin‐associated factors, which include plant homeodomain (PHD) fingers, a bromodomain and a proline‐tryptophan‐tryptophan‐proline (PWWP) domain. Bromodomains are conserved structural motifs generally known to recognize acetylated histones, and the BRPF1 bromodomain preferentially selects for H2AK5ac, H4K12ac and H3K14ac. We solved the X‐ray crystal structures of the BRPF1 bromodomain in complex with the H2AK5ac and H4K12ac histone peptides. Site‐directed mutagenesis on residues in the BRPF1 bromodomain‐binding pocket was carried out to investigate the contribution of specific amino acids on ligand binding. Our results provide critical insights into the molecular mechanism of ligand binding by the BRPF1 bromodomain, and reveal that ordered water molecules are an essential component driving ligand recognition. Abstract : Solved the crystal structure of the BRPF1 bromodomain bound to the H2AK5ac ligand. Solved the crystal structure of the BRPF1 bromodomain bound to the H4K12ac ligand. Site‐directed mutagenesis identifies critical binding pocket residues. ITC experiments quantified the effect mutations have on ligand binding affinity. We outline the molecular mechanism of acetyllysine binding by the BRPF1 bromodomain. Ordered water molecules are an essential component driving ligand recognition.