SplicingTypesAnno: Annotating and quantifying alternative splicing events for RNA-Seq data. Issue 1 (April 2015)

• Record Type: Journal Article
• Authors: Sun, Xiaoyong; Zuo, Fenghua; Ru, Yuanbin; Guo, Jiqiang; Yan, Xiaoyan; Sablok, Gaurav
• Is Part Of: Computer methods and programs in biomedicine. Volume 119:Issue 1(2015)
• Page Start: 53
• Page End: 62
• Publication Date: 2015-04
• Subjects: Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2015.02.004
• Languages: English
• ISSNs: 0169-2607

Abstract

<abstract abstract-type="author-highlights" id="abs1010"> <title id="sect5055">Highlights</title> <sec> <p id="spar1010"> <list id="lis1005"> <list-item id="lsti0005"> <label></label> <p id="par0005">User friendly R-package for identifcation, annotating and analyzing alternative splicing events from RNA-Seq.</p> </list-item> <list-item id="lsti0010"> <label></label> <p id="par0010">Provide annotation for major alternative splicing at exon/intron level and identifies novel alternative splicing events using the GTF/GFF file.</p> </list-item> <list-item id="lsti0015"> <label></label> <p id="par0015">Generates user-friendly web report and additional BED files for IGV visualization.</p> </list-item> <list-item id="lsti0020"> <label></label> <p id="par0020">Provides comprehensive genome scale analysis for users with High Performance Computing (HPC) and Gene-level analysis for memory efficient personal computers.</p> </list-item> </list> </p> </sec> </abstract>