DegP primarily functions as a protease for the biogenesis of β‐barrel outer membrane proteins in the Gram‐negative bacterium Escherichia coli. (15th January 2014)
- Record Type:
- Journal Article
- Title:
- DegP primarily functions as a protease for the biogenesis of β‐barrel outer membrane proteins in the Gram‐negative bacterium Escherichia coli. (15th January 2014)
- Main Title:
- DegP primarily functions as a protease for the biogenesis of β‐barrel outer membrane proteins in the Gram‐negative bacterium Escherichia coli
- Authors:
- Ge, Xi
Wang, Rui
Ma, Jing
Liu, Yang
Ezemaduka, Anastasia N.
Chen, Peng R.
Fu, Xinmiao
Chang, Zengyi - Abstract:
- <abstract abstract-type="main" id="febs12701-abs-0001"> <title> <x xml:space="preserve">Abstract</x> </title> <sec id="febs12701-sec-0001" sec-type="section"> <p>DegP (also designated as HtrA) and its homologs are found in prokaryotic cells and such eukaryotic organelles as mitochondria and chloroplasts. DegP has been found to be essential for the growth of Gram‐negative bacteria under heat shock conditions and arguably considered to possess both protease and chaperone activities. The function of DegP has not been clearly defined. Using genetically incorporated non‐natural amino acids as photo‐crosslinkers, here we identified the β‐barrel outer membrane proteins (OMPs) as the major natural substrates of DegP in <italic>Escherichia coli</italic> cells. We also demonstrated that DegP primarily functions as a protease, at both low and high temperatures, to eliminate unfolded OMPs, with hardly any appreciable chaperone activity in cells. We also found that the toxic and cell membrane‐damaging misfolded OMPs would accumulate in DegP‐lacking cells cultured under heat shock conditions. Together, our study defines the primary function of DegP in OMP biogenesis and offers a mechanistic insight into the essentiality of DegP for cell growth under heat shock conditions.</p> </sec> <sec id="febs12701-sec-0002" sec-type="section"> <title>Structured digital abstract</title> <p> <list id="febs12701-list-0001" list-type="bullet"> <list-item> <p> <ext-link ext-link-type="uri"<abstract abstract-type="main" id="febs12701-abs-0001"> <title> <x xml:space="preserve">Abstract</x> </title> <sec id="febs12701-sec-0001" sec-type="section"> <p>DegP (also designated as HtrA) and its homologs are found in prokaryotic cells and such eukaryotic organelles as mitochondria and chloroplasts. DegP has been found to be essential for the growth of Gram‐negative bacteria under heat shock conditions and arguably considered to possess both protease and chaperone activities. The function of DegP has not been clearly defined. Using genetically incorporated non‐natural amino acids as photo‐crosslinkers, here we identified the β‐barrel outer membrane proteins (OMPs) as the major natural substrates of DegP in <italic>Escherichia coli</italic> cells. We also demonstrated that DegP primarily functions as a protease, at both low and high temperatures, to eliminate unfolded OMPs, with hardly any appreciable chaperone activity in cells. We also found that the toxic and cell membrane‐damaging misfolded OMPs would accumulate in DegP‐lacking cells cultured under heat shock conditions. Together, our study defines the primary function of DegP in OMP biogenesis and offers a mechanistic insight into the essentiality of DegP for cell growth under heat shock conditions.</p> </sec> <sec id="febs12701-sec-0002" sec-type="section"> <title>Structured digital abstract</title> <p> <list id="febs12701-list-0001" list-type="bullet"> <list-item> <p> <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0C0V0" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">DegP</ext-link> <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0915" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">physically interacts</ext-link> with <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A910" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompA</ext-link> by <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0096" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">pull down</ext-link> (<ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9078834" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">1</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9078873" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">2</ext-link>)</p> </list-item> <list-item> <p> <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0C0V0" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">DegP</ext-link> <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0914" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">physically interacts</ext-link> with <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A917" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompX</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A910" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompA</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A915" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompW</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P02931" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompF</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P21420" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">nmpC</ext-link> and <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P06996" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompC</ext-link> by <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0096" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">pull down</ext-link> (<ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9076025" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">View interaction</ext-link>)</p> </list-item> <list-item> <p> <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0C0V0" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">DegP</ext-link> <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0914" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">physically interacts</ext-link> with <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P06996" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompC</ext-link> and <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P02931" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompF</ext-link> by <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0096" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">pull down</ext-link> (<ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9078820" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">View interaction</ext-link>)</p> </list-item> <list-item> <p> <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0C0V0" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">DegP</ext-link> <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0914" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">physically interacts</ext-link> with <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P06996" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompC</ext-link> and <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A910" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompA</ext-link> by <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0096" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">pull down</ext-link> (<ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9078859" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">View interaction</ext-link>)</p> </list-item> <list-item> <p> <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0C0V0" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">DegP</ext-link> <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0914" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">physically interacts</ext-link> with <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P06996" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompC</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0AEX9" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">malE</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P45523" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">fkpA</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A915" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompW</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A910" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompA</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P02931" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompF</ext-link>, <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P21420" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">nmpC</ext-link> and <ext-link ext-link-type="uri" xlink:href="http://www.uniprot.org/uniprot/P0A917" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">ompX</ext-link> by <ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0030" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">cross-linking study</ext-link> (<ext-link ext-link-type="uri" xlink:href="http://www.ebi.ac.uk/intact/interaction/EBI-9073099" xlink:type="simple" xmlns:xlink="http://www.w3.org/1999/xlink">View interaction</ext-link>)</p> </list-item> </list> </p> </sec> </abstract> … (more)
- Is Part Of:
- FEBS journal. Volume 281:Number 4(2014)
- Journal:
- FEBS journal
- Issue:
- Volume 281:Number 4(2014)
- Issue Display:
- Volume 281, Issue 4 (2014)
- Year:
- 2014
- Volume:
- 281
- Issue:
- 4
- Issue Sort Value:
- 2014-0281-0004-0000
- Page Start:
- 1226
- Page End:
- 1240
- Publication Date:
- 2014-01-15
- Subjects:
- Biochemistry -- Periodicals
Molecular biology -- Periodicals
Pathology, Molecular -- Periodicals
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http://www.blackwell-synergy.com/servlet/useragent?func=showIssues&code=ejb ↗ - DOI:
- 10.1111/febs.12701 ↗
- Languages:
- English
- ISSNs:
- 1742-464X
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