COI barcodes and phylogeny of doves (Columbidae family). (December 2013)

• Record Type: Journal Article
• Authors: Khan, Haseeb Ahmad; Arif, Ibrahim Abdulwahid
• Is Part Of: Mitochondrial DNA. Volume 24:Number 6(2013:Dec.)
• Page Start: 689
• Page End: 696
• Publication Date: 2013-12
• Subjects: Mitochondrial DNA -- Periodicals; Mitochondrial DNA -- Abnormalities -- Periodicals; Nucleotide sequence -- Periodicals; Gene mapping -- Periodicals; 572.869
• DOI: 10.3109/19401736.2013.773319
• Languages: English
• ISSNs: 1940-1736

Abstract

<abstract> <title> <x xml:space="preserve">Abstract</x> </title> <p>Cytochrome oxidase subunit I (COI) gene has been recognized as an authentic tool for species identification. Besides its potential barcoding capacity, COI sequences have also been used for inferring the phylogeny. Phylogenetic relationships among genera of Columbidae (pigeons and doves family) have not been fully resolved because of scarce sampling of taxa and limited availability of sequence data. In this study, we have evaluated the efficiency of COI barcodes for species identification and phylogenetic analysis of various doves. We sequenced the 693 bp region of COI gene of three species of doves including <italic>Oena capensis</italic>, <italic>Streptopelia decaocto</italic>, and <italic>Streptopelia senegalensis</italic>. After retrieving the relevant sequences from the GenBank, the entire data-set of 85 sequences represented 25 dove species from 11 different genera of the family Columbidae. The COI sequences of four species including <italic>Chalcophaps indica</italic> (two specimens), <italic>Columbina inca</italic> (five specimens), <italic>Geopelia striata</italic> (three specimens), and <italic>Macropygia phasianella</italic> (three specimens) were identical. The mean intraspecific base differences ranged from 0 to 37 while the <italic>P</italic>-distances ranged between 0 and 0.058. For most of the species, the <italic>P</italic>-distances were ≤ 0.008. Phylogenetic analysis differentiated the taxa into three major clusters. One of the clusters grouped five genera including Claravis, Columbina, Gallicolumba, Geopelia, and Geotrygon. The remaining two clusters grouped three genera each including Chalcophaps, Oena, and Turtur in one cluster and Macropygia, Streptopelia, and Zenaida in another cluster. Further sub-clustering clearly separated all the genera into individual clusters except two discrepancies for the genera Streptopelia and Turtur. Species-level cladistics clearly separated all the species into distinctive clades. In conclusion, COI barcoding is a powerful tool for species identification with added information on phylogenetic inference. The finding of this study will help to understand the complex phylogeny of the family Columbidae.</p> </abstract>