Epigenetics in Aquaculture. (2023)

• Record Type: Book
• Further Information: Note: Francesc Piferrer, Hanping Wang.
• Editors: Piferrer, Francesc; Wang, Hanping
• Contents: Table of Contents List of Contributors Preface Acknowledgements Part I. Theoretical and practical bases of epigenetics in aquaculture Chapter 1 The potential role of epigenetics in aquaculture : Insights from different taxa to diverse teleosts Han-Ping Wang 1.1 Introduction 1.1.1 Concepts and terminology 1.1.2. Epigenetic mechanisms and phenomena 1.2 Key players of epigenetics 1.2.1 DNMTs 1.2.2 TET 1.2.3 KMT and KDM 1.2.4 HATs/KATs and HDACs 1.3. Divergent epigenetic mechanisms from different taxa to diverse teleosts 1.4 The roles and applications of epigenetics 1.4.1 Reproduction and early development 1.4.1.1 The potential roles of epigenetics in early development 1.4.1.2 The potential applications of epigenetics in reproduction and breeding 1.4.2 Health and wellbeing management 1.4.2.1 The roles of epigenetics in controlling stress and disease 1.4.2.2 The potential applications of epigenetics in health and wellbeing management 1.4.3 Nutrition and growth advancement 1.4.3.1 The roles of epigenetics in nutrition and growth 1.4.3.2 The potential applications of epigenetics in nutrition and growth 1.4.3 Sustainability enhancement 1.4.4.1 The roles of epigenetics in adaption and sustainability 1.4.4.2 The potential applications of epigenetics in sustainability enhancement 1.5 Conclusion and perspectives 2 Transcriptional epigenetic mechanisms in aquatic species Laia Navarro-Martín, Jan A. Mennigen, Jana Asselman 2.1. Epigenetic mechanisms as modulators of transcription 2.1.1. DNA methylation: 2.1.1.1. Regulation of DNA methylation status by key enzymes 2.1.1.2. Methylation changes translated into functional states in the genome 2.1.2. Chromatin remodeling through histone modifications 2.2. Transcriptional epigenetic mechanisms in aquatic species 2.2.1. Teleost fish 2.2.2. Aquatic invertebrates 2.3. Modulation of biological functions by transcriptional epigenetic mechanisms in aquaculture species of interest 2.3.1. Growth and development 2.3.2. Nutrition and metabolism 2.3.3. Reproduction and broodstock selection 2.3.4. Stress and immune responses 2.4. Conclusions and perspectives 2.5. Acknowledgments 2.6. References 3 Epigenetic regulation of gene expression by non-coding RNAs Elena Sarropoulou and Ignacio Fernández 3.1. General introduction 3.2. Major types of ncRNAs 3.2.1. Small non-coding RNA (sncRNA) 3.2.1.1. MicroRNA (miRNA) 3.2.1.2. P-element–induced wimpy testis (Piwi)-interacting RNA (piRNA) 3.2.1.3. Small nuclear RNA (snRNA) and small nucleolar RNA (snoRNA) 3.2.1.4. Transfer RNA (tRNA)-derived fragments (tRFs) 3.2.2. Measurement of sncRNAs 3.2.2.1. Methods for sncRNA detection 3.2.2.2. sncRNA expression 13 3.2.3 long non-coding RNA (lncRNA) 3.2.3.1. circRNAs 16 3.2.3.2 Large intergenic noncoding RNAs (lincRNAs) 3.3. Roles of ncRNA in key processes of teleosts 3.3.1. Roles of ncRNA during development 3.1.1. Evaluated miRNA functions during teleost development 3.3.2. Roles of ncRNA during reproduction 3.3.3. Roles of ncRNA in immune and stress response 3.4. ncRNAs as Biomarkers and Future perspectives 4 Epigenetic inheritance in aquatic organisms Ramji K. Bhandari 4.1. Introduction 4.1.1. Gene-environment interaction and epigenetic inheritance 4.1.2. Key mechanisms underlying epigenetic inheritance 4.1.3. Epigenetic inheritance of traits 4. 2. Epigenetic reprogramming of embryo and germline cells 4.2.1. Reprogramming of the embryo 4.2.2. Reprogramming of primordial germ cells 4.3. Heritable effects of environmental exposures 4.3.1. Developmental exposure effects 4.3.2. Postnatal or parental exposure effects 4.3.3. Germline transmission of epigenetic alterations: Experimental evidence 4.3.4. Multigenerational versus transgenerational phenotypes 4.3.5. Parent-of-origin and transgenerational phenotypes 4.4. Past Exposure and Future phenotypic consequences in aquatic species 4.4.1. Effects on fish 4.4.2. Transgenerational fish phenotype and population effects: A perspective 4.4.3 Designing transgenerational laboratory experiments 4.4.4. Transgenerational effects in hatchery-raised fish: Authors’ view 4.4.5. Potential for the Mitigation of Epigenetically Inherited Harmful Effects in Fish 4.5. Conclusions and Perspectives 5 Environmental epigenetics in fish: Response to climate change stressors Zhi-Gang Shen, Yue Yu 5.1. Overview of climate change and environmental stressors 5.1.1. Temperature rise and extreme weather events 5.1.2. Acidification 5.1.3. Hypoxia 5.1.4. Phenology and distribution 5.2. Epigenetic response to climate change 5.2.1. Sex determination and differentiation 5.2.2. Gonadal development and reproduction 5.2.3. Growth, size, and morphology 5.2.4. Nutrition 5.2.5. Stress response and survival 5.3. Conclusions and Future Perspectives 6 Analytical methods and tools to study the epigenome Oscar Ortega-Recaldeand Timothy A. Hore 6.1. Introduction 6.2. Recommendations for choosing a method to study the epigenome 6.3. Methods and tools to analyze epigenetic modifications 6.3.1. DNA methylation methods according to detection strategy 6.3.1.1. Enzyme-based methods 6.3.1.2. Affinity-based methods 6.3.1.3. Bisulfite-based methods 6.3.1.4. Direct detection methods 6.3.2. DNA methylation methods according to resolution level 6.3.2.1. Low resolution 6.3.2.2. Medium resolution 6.3.2.3. Single-nucleotide resolution 6.3.3. DNA methylation methods according to genome coverage 6.3.3.1. Targeted approaches 6.3.3.2. Genome-wide 6.3.3.3. Whole genome 6.3.4. Histone modifications 6.3.4.1. Chromatin immunoprecipitation 6.3.4.2. CUT&RUN And CUT&Tag 6.3.5. Assessment of other epigenetic modifications 6.4. Bioinformatic analysis 6.5. Databases and other public resources 6.6. Conclusions and outlook Part II: Epigenetics insights from major aquatic groups 7 Epigenetics in sexual maturation and gametes of fish Lombó Alonso Marta, Laurent
• Edition: 1st
• Publisher Details: Wiley
• Publication Date: 2023
• Extent: 1 online resource (512 pages)
• Languages: English
• ISBNs: 9781119821939
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.