Bioinformatics for cancer immunotherapy : methods and protocols /: methods and protocols. ([2020])

• Record Type: Book
• Further Information: Note: Edited by Sebastian Boegel.
• Editors: Boegel, Sebastian
• Contents: Bioinformatics for Cancer Immunotherapy -- An Individualized Approach for Somatic Variant Discovery -- Ensemble-Based Somatic Mutation Calling in Cancer Genomes -- SomaticSeq: An Ensemble and Machine Learning Method to Detect Somatic Mutations -- HLA Typing from RNA Sequencing and Applications to Cancer -- Rapid High-Resolution Typing of Class I HLA Genes by Nanopore Sequencing -- HLApers: HLA Typing and Quantification of Expression with Personalized Index -- High-Throughput MHC I Ligand Prediction using MHCflurry -- In Silico Prediction of Tumor Neoantigens with TIminer -- OpenVax: An Open-Source Computational Pipeline for Cancer Neoantigen Prediction -- Improving MHC-I Ligand Identification by Incorporating Targeted Searches of Mass Spectrometry Data -- The SysteMHC Atlas: A Computational Pipeline, A Website, and A Data Repository for Immunopeptidomics Analysis -- Identification of Epitope-Specific T Cells in T Cell Receptor Repertoires -- Modeling and Viewing T Cell Receptors using TCRmodel and TCR3d -- In Silico Cell Type Deconvolution Methods in Cancer Immunotherapy -- Immunedeconv -- An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA Sequencing Data -- EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data -- Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data -- Cell Type Enrichment Analysis of Bulk Transcriptomes using xCell -- Cap Analysis of Gene Expression (CAGE), A Quantitative and Genome-Wide Assay of Transcription Start Sites.
• Publisher Details: New York, NY : Humana Press
• Publication Date: 2020
• Extent: 1 online resource (xii, 304 pages), illustrations
• Subjects: 614.5999; Cancer -- Immunotherapy -- Laboratory manuals; Cancer -- Research; Bioinformatics; Immunology; Neoplasms -- therapy; Immunotherapy -- methods; Computational Biology -- methods; Bioinformatics; Cancer -- Immunotherapy; Cancer -- Research; Immunology; Laboratory Manual; Laboratory manuals
• Languages: English
• ISBNs: 9781071603277; 1071603272
• Related ISBNs: 9781071603260; 1071603264
• Notes: Note: Includes bibliographical references and index.; Note: Online resource; title from PDF title page (SpringerLink, viewed January 25, 2021).
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.