Yeast systems biology : methods and protocols /: methods and protocols. (2019)

• Record Type: Book
• Further Information: Note: Edited by Stephen G. Oliver, Juan I. Castrillo.
• Editors: Oliver, S. G (Stephen George), 1949-; Castrillo, Juan I
• Contents: Dedication…Preface…Table of Contents…Contributing Authors… Part I Yeast Systems Biology 1. Yeast Systems Biology: The Continuing Challenge of Eukaryotic ComplexityStephen G. Oliver Part II Experimental Systems Biology: High-Throughput Genome-Wide and Molecular Studies 2. Capture of Ribonucleotides in Yeast Genomic DNA using Ribose-SeqSathya Balachander, Taehwan Yang, Gary Newnam, Waleed M. M. El-Sayed, Kyung Duk Koh, and Francesca Storici 3. Method for Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas9Jessica M. Walter, Max G. Schubert, Stephanie H. Kung, Kristy Hawkins, Darren M. Platt, Aaron D. Hernday, Tina Mahatdejkul-Meadows, Wayne Szeto, Sunil S. Chandran, Jack D. Newman, and Andrew A. Horwitz 4. Ultra-High-Density Screens for Genome-Wide Yeast EMAPs in a Single PlateKatherine Licon, John Paul Shen, Brenton P. Munson, Manuel Michaca, Cole Fassino, Luke Fassino, Jason F. Kreisberg, and Trey Ideker 5. Epi-ID: Systematic and Direct Screening for Chromatin Regulators in Yeast by Barcode ChIP-SeqDeepani W. Poramba-Liyanage, Tessy Korthout, and Fred van Leeuwen 6. Transcript Profiling Analysis through Paired-End Ditag (PET) Approach Coupled with Deep Sequencing Revealing Transcriptome Complexity in YeastYani Kang, Hong Sain Ooi, and Xiaodong Zhao 7. RNA Sequencing Best Practices: Experimental Protocol and Data AnalysisAndy Hesketh 8. Advanced Methods for the Analysis of Altered Pre-mRNA Splicing in Yeast and DiseaseHuw B. Thomas and Raymond T. O'Keefe 9. PAT-Seq: A Method for Simultaneous Quantitation of Gene Expression, Poly(A)-Site Selection and Poly(A) Length-Distribution in Yeast TranscriptomesAngavai Swaminathan, Paul F. Harrison, Thomas Preiss, and Traude H. Beilharz 10. Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution using hyperLOPITDaniel J. H. Nightingale, Stephen G. Oliver, and Kathryn S. Lilley 11. Data-Independent Acquisition for Yeast GlycoproteomicsLucía F. Zacchi and, Benjamin L. Schulz 12. Protein-Protein Interaction Profiling in Candida albicans Revealed by Biochemical Purification-Mass Spectrometry (BP/MS)Reza Pourhaghighi, Teresa R. O'Meara, Leah E. Cowen, and Andrew Emili 13. Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and ChallengesBenedikt M. Beckmann and SanderGranneman 14. Metabolomic Analysis of Yeast and Human Cells: Latest Advances and ChallengesRomanas Chaleckis, Kazuto Ohashi, Isabel Meister, Shama Naz, and Craig E. Wheelock 15. Measuring the Activity of Plasma Membrane and Vacuolar Transporters in YeastMelody Cools, Maria Rompf, Andreas Mayer, and Bruno André 16. Self-Establishing Communities: A Yeast Model to Study the Physiological Impact of Metabolic Cooperation in Eukaryotic CellsKate Campbell, Clara Correia-Melo, and Markus Ralser Part III Computational System Biology: Data Management and Modeling the Cell 17. Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best PracticesNatalie J. Stanford, Martin Scharm, Paul D. Dobson, Martin Golebiewski, Mike Hucka, Varun B. Kothamachu, David Nickerson, Stuart Owen, Jürgen Pahle, Ulrike Wittig, Dagmar Waltemath, Carole Goble, Pedro Mendes, and Jacky Snoep 18. Rational Design and Methods of Analysis for the Study of Short- and Long-Term Dynamic Responses of Eukaryotic SystemsDuygu Dikicioglu 19. Genome-Scale Metabolic Modeling from Yeast to Human Cell Models of Complex Diseases: Latest Advances and ChallengesYu Chen, Gang Li, and Jens Nielsen 20. Next-Generation Genome-Scale Models Incorporating Multilevel 'omics Data: From Yeast to HumanTunahan Çakır, Emel Kökrek, Gülben Avşar, Ecehan Abdik, and Pınar Pir 21. Advanced Modeling of Cellular Proliferation: Towards a Multi-Scale Framework Coupling Cell Cycle to Metabolism by Integrating Logical and Constraint-Based ModelsLucas van der Zee and Matteo Barberis Part IV Using Yeast to Model Human Diseases 22. Yeast Genome Screening and Methods for the Discovery of Metabolism Pathways Involved in a Phenotypic Response to Anti-Cancer Agents Magdalena Cal, Irwin Matyjaszczyk, and Stanisław Ułaszewski 23. Advanced Yeast Models of Familial Alzheimer Disease Expressing FAD-Linked Presenilin to Screen Mutations and g-Secretase ModulatorsEugene Futai 24. From Yeast-to-Humans: Leveraging New Approaches in Yeast to Accelerate Discovery of Therapeutic Targets for SynucleinopathiesJeff S. Piotrowski and Daniel F. Tardiff.
• Edition: Second edition
• Publisher Details: New York, NY : Humana Press
• Publication Date: 2019
• Extent: 1 online resource (xvi, 447 pages), illustrations (some color)
• Subjects: 579.5/63; Yeast fungi -- Laboratory manuals; Systems biology; Electronic books
• Languages: English
• ISBNs: 9781493997367
• Related ISBNs: 149399736X; 9781493997350
• Notes: Note: Online resource; title from PDF title page (SpringerLink, viewed October 14, 2019).
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.