Mass spectrometry data analysis in proteomics. (2020)
- Record Type:
- Book
- Title:
- Mass spectrometry data analysis in proteomics. (2020)
- Main Title:
- Mass spectrometry data analysis in proteomics
- Further Information:
- Note: Edited by Rune Matthiesen.
- Editors:
- Matthiesen, Rune
- Contents:
- 1. Introduction to Mass Spectrometry-based Proteomics Rune Matthiesen and Jakob Bunkenborg 2. LC-MS Spectra Processing Rune Matthiesen 3. Isotopic Distributions Alan L. Rockwood and Magnus Palmblad 4. Retention Time Prediction and Protein Identification Alex Henneman and Magnus Palmblad 5. Comparing Peptide Spectra Matches Across Search Engines Rune Matthiesen, Gorka Prieto and Hans Christian Beck 6. Calculation of False Discovery Rate for Peptide and Protein Identification Gorka Prieto and Jesús Vázquez 7. Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry Rune Matthiesen and Ana Sofia Carvalho 8. Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides Jakob Bunkenborg, and Rune Matthiesen 9. Solution to Dark Matter Identified by Mass-tolerant Database Search Rune Matthiesen 10. Phosphoproteomics Profiling to Identify Altered Signaling Pathways and Kinase-targeted Cancer Therapies Barnali Deb, Irene A. George, Jyoti Sharma, and Prashant Kumar 11. Mass Spectrometry Based Characterization of Ub- and UbL-modified Proteins Nagore Elu, Benoit Lectez, Juanma Ramirez, Nerea Osinalde, and Ugo Mayor 12. Targeted Proteomics as a Tool for Quantifying Urine-based Biomarkers Sonali V Mohan, David S Nayakanti, Gajanan Sathe, Irene A Geroge, Harsha Gowda, PrashantKumar 13. Data Imputation in Merged Isobaric Labelling-based Relative Quantification Datasets Nicolai Bjødstrup Palstrøm, Rune Matthiesen, and Hans Christian Beck 14. Clustering1. Introduction to Mass Spectrometry-based Proteomics Rune Matthiesen and Jakob Bunkenborg 2. LC-MS Spectra Processing Rune Matthiesen 3. Isotopic Distributions Alan L. Rockwood and Magnus Palmblad 4. Retention Time Prediction and Protein Identification Alex Henneman and Magnus Palmblad 5. Comparing Peptide Spectra Matches Across Search Engines Rune Matthiesen, Gorka Prieto and Hans Christian Beck 6. Calculation of False Discovery Rate for Peptide and Protein Identification Gorka Prieto and Jesús Vázquez 7. Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry Rune Matthiesen and Ana Sofia Carvalho 8. Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides Jakob Bunkenborg, and Rune Matthiesen 9. Solution to Dark Matter Identified by Mass-tolerant Database Search Rune Matthiesen 10. Phosphoproteomics Profiling to Identify Altered Signaling Pathways and Kinase-targeted Cancer Therapies Barnali Deb, Irene A. George, Jyoti Sharma, and Prashant Kumar 11. Mass Spectrometry Based Characterization of Ub- and UbL-modified Proteins Nagore Elu, Benoit Lectez, Juanma Ramirez, Nerea Osinalde, and Ugo Mayor 12. Targeted Proteomics as a Tool for Quantifying Urine-based Biomarkers Sonali V Mohan, David S Nayakanti, Gajanan Sathe, Irene A Geroge, Harsha Gowda, PrashantKumar 13. Data Imputation in Merged Isobaric Labelling-based Relative Quantification Datasets Nicolai Bjødstrup Palstrøm, Rune Matthiesen, and Hans Christian Beck 14. Clustering Clinical Data in R Ana Pina, Maria Paula Macedo, and Roberto Henriques 15. Review of Issues and Solutions to Data Analysis Reproducibility and Data Quality in Clinical Proteomics Mathias Walzer and Juan Antonio Vizcaíno 16. Review of Batch Effects Prevention, Diagnostics, and Correction Approaches Jelena Čuklina, Patrick G. A. Pedrioli, and Ruedi Aebersold 17. Using the Object-oriented PowerShell for Simple Proteomics Data Analysis Yassene Mohammed and Magnus Palmblad 18. Considerations in the Analysis of Hydrogen Exchange Mass Spectrometry Data Michael J. Eggertson, Keith Fadgen, John R. Engen, and Thomas E. Wales. … (more)
- Edition:
- Third edition
- Publisher Details:
- New York, NY : Humana Press
- Publication Date:
- 2020
- Extent:
- 1 online resource (x, 445 pages), illustrations (some color)
- Subjects:
- 572.6
Proteomics -- Methodology
Mass spectrometry
Electronic books - Languages:
- English
- ISBNs:
- 9781493997442
1493997440 - Related ISBNs:
- 9781493997435
- Notes:
- Note: Online resource; title from PDF title page (SpringerLink, viewed October 1, 2019).
- Access Rights:
- Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
- Access Usage:
- Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library HMNTS - ELD.DS.458896
- Ingest File:
- 02_599.xml