The Brassica rapa genome. (2015)

• Record Type: Book
• Further Information: Note: Xiaowu Wang, Chittaranjan Kole, editors.
• Editors: Wang, Xiaowu; Kole, Chittaranjan
• Contents: Preface; Contents; 1 Economic/Academic Importance of Brassica rapa; Abstract; 1.1 Introduction; 1.2 Origins of Brassica rapa; 1.3 Biosystematic Relationship Among the Brassica Species; 1.4 Crops of Brassica rapa; 1.5 Production of Doubled Haploids in Brassica rapa; 1.6 Reproduction Biology; 1.6.1 Self-incompatibility; 1.6.2 Male Sterility; 1.6.2.1 Genic Male Sterility; 1.6.2.2 Cytoplasmic Male Sterility; 1.6.2.3 Polima CMS; 1.7 Resistance to Disease; 1.7.1 Resistance to Turnip Mosaic Virus; 1.7.2 Resistance to Clubroot; 1.8 Glucosinolates; 1.9 Transfer of Genes Between B. rapa and B. napus. 4 De Novo Genome Assembly of Next-Generation Sequencing DataAbstract; 4.1 Introduction; 4.2 The Challenge of Genome Assembly; 4.3 De Novo Assembly Algorithm; 4.3.1 Classification of De Novo Assembly Algorithm; 4.3.2 The Overlap Layout Consensus Approach; 4.3.3 De Bruijn Graph Approach; 4.3.4 Extension-Based Approach; 4.4 Comparison of Algorithms; 4.4.1 Datasets and Assemblers; 4.4.2 Performance Comparison Using Medium-Sized Genomes; 4.4.3 Performance Comparison Using Nine Bacterial Genomes; 4.5 Discussion; References; 5 Crop Genome Annotation: A Case Study for the Brassica rapa Genome. Abstract5.1 Introduction; 5.2 The Processes of a Genome Annotation; 5.2.1 Filtering the Sequences and Masking Putative Repeats; 5.2.2 Prediction of Protein-Coding Genes; 5.2.3 Identification of Non-coding RNAs; 5.2.4 Functional Annotation of Proteins and Genome Visualization; 5.3 The Annotation Results of the Reference Sequence; 5.3.1 Repetitive Elements in the Reference Genome; 5.3.2 Protein-Coding Genes and NcRNAs; 5.3.3 Summary of the Previous Annotation of Brassica Rapa; 5.3.4 Comparison of the Results of This Study with Those of the Previous Annotation; 5.4 Conclusion; Acknowledgments.
• Publisher Details: Heidelberg : Springer
• Publication Date: 2015
• Extent: 1 online resource (viii, 169 pages), color illustrations
• Subjects: 635/.34233; Brassica -- Genetics; Vegetables, Chinese; GARDENING -- Essays; GARDENING -- Reference; GARDENING -- Vegetables; SCIENCE -- Life Sciences -- Horticulture; Brassica -- Genetics; Vegetables, Chinese; Life Sciences; Plant Breeding/Biotechnology; Plant Genetics & Genomics; Agriculture; Bioinformatics; Electronic books
• Languages: English
• ISBNs: 9783662479018; 3662479001; 9783662479001
• Related ISBNs: 366247901X; 9783662479001
• Notes: Note: References2 Background History of the National and International Brassica rapa Genome Sequencing Initiatives; Abstract; References; 3 Genomic Resources and Physical Mapping of the B. rapa Genome; Abstract; 3.1 Introduction; 3.2 Genome Structure; 3.2.1 Karyotype; 3.2.2 Heterochromatin; 3.3 Genomic Resources; 3.3.1 BAC Libraries and BAC-end Sequences; 3.3.2 cDNA Libraries and Expressed Sequence Tags; 3.3.3 BAC Sequences; 3.4 Physical Mapping; 3.4.1 High-Information Content Fingerprinting; 3.4.2 Physical Map Based on the HICF Method; 3.5 Conclusion; Acknowledgments; References.; Note: References6 Miniature Transposable Elements (mTEs) : Impacts and Uses in the Brassica Genome; Abstract; 6.1 Introduction; 6.2 Characteristics and Distribution of mTEs; 6.2.1 TRIMs; 6.2.2 SINEs; 6.2.3 MITEs; 6.3 Identification of mTEs; 6.4 Influence of mTEs on Evolution of the Triplicated Brassica Genome; 6.5 Copy Number Variation of mTE Members Between Accessions and Species; 6.6 Utility of mTEs as Molecular Markers; 6.6.1 Insertion Polymorphism of mTEs; 6.6.2 Transposon Display (TD) for mTEs; 6.7 Conclusion; Acknowledgments; References.; Note: Online resource; title from PDF title page (EBSCO, viewed September 11, 2015).
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