The maize genome. ([2018])

• Record Type: Book
• Further Information: Note: Jeffrey Bennetzen, Sherry Flint-Garcia, Candice Hirsch, Roberto Tuberosa, editors.
• Editors: Bennetzen, Jeffrey L (Jeffrey Lynn); Flint-Garcia, Sherry; Hirsch, Candice; Tuberosa, R (Roberto)
• Contents: Intro; Preface to the Series; Preface to "The Maize Genome" Volume; Contents; Genome Sequencing and Genotyping; 1 Draft Assembly of the F2 European Maize Genome Sequence and Its Comparison to the B73 Genome Sequence: A Characterization of Genotype-Specific Regions; Abstract; 1.1 F2 Is Characteristic from a European Hybridization Event; 1.2 B73- and F2-Specific Genome Region Discovery and Combination into a Draft B73-F2 Pan-Genome Sequence; 1.3 F2 Non-B73 Genes Are Expressed in Other Maize Lines, but Are not Well Conserved Outside Maize 1.4 The Dispensable Genome: A Genomic Faction that Recombines Less Than the Rest of the Genome1.5 Analysis of PAV Alleles at the Population Level; 1.6 Tomorrow's Challenges in Maize Structural Variation; References; 2 The Maize Pan-Genome; Abstract; 2.1 Introduction; 2.2 Mechanisms that Generate Genome Content Variation; 2.2.1 Transposable Elements; 2.2.2 Unequal Recombination; 2.2.3 Non-allelic Homologues; 2.2.4 Horizontal Gene Transfer; 2.2.5 Genome Duplication and Fractionation; 2.3 Contemporary Tools to Measure Genome Content Variation; 2.3.1 Reference-Based Methods 2.3.2 Non-Reference-Based Methods2.3.3 Iterative Mapping and Assembly; 2.4 History of Maize Genome Content Variation Studies; 2.4.1 Molecular and Cytogenetic Era; 2.4.2 Sanger Sequencing Era; 2.4.3 Array-Based Comparative Genomic Hybridization Era; 2.4.4 Second- and Third-Generation Sequencing Era; 2.5 Functional Importance of Genome Content Variation; 2.5.1 Gene and Genome Evolution; 2.5.2 Phenotypic Association and Cloned Genes; 2.5.3 Heterosis; 2.5.4 Dosage Balance; 2.6 Future Bioinformatic Challenges in the Era of Multiple Genome Assemblies; Acknowledgements; References 3 Rapid, Affordable, and Scalable Genotyping for Germplasm Exploration in MaizeAbstract; 3.1 Introduction; 3.2 Array-Based Genotyping Platforms; 3.2.1 Illumina® GoldenGate™ Assay; 3.2.2 Illumina® MaizeSNP50 BeadChip; 3.2.3 600 K and 55 K Affymetrix® Axiom® Maize Genotyping Array; 3.3 Sequence-Based Genotyping Platforms; 3.3.1 Genotyping by Sequencing (GBS); 3.3.2 DArTseq; 3.3.3 rAmpSeq; 3.3.4 Transcriptome Sequencing; 3.4 Future Directions and Challenges: Cheap Sequencing and Data Sharing; Acknowledgements; References; Genome Structure and Phenomena; 4 Maize Transposable Element Dynamics Abstract4.1 Introduction; 4.2 The Recent History of TE Activity in the Zea Lineage; 4.2.1 Panicoid Grass Genomes; 4.2.2 Three Diploid Zea Species; 4.2.3 Vertical Versus Horizontal TE Transmission; 4.3 The Transition Between Inactive and Active TE States; 4.3.1 Epigenetic and Genetic Regulation; 4.3.2 Mutational Control; 4.3.3 Stress-Induced Activation; 4.4 Selection for or Against General TE Activity; 4.5 Conclusions; Acknowledgements; References; 5 Genomics of Maize Centromeres; Abstract; 5.1 Introduction; 5.2 Genetic Composition of Maize Centromeres; 5.2.1 Centromere Repeats
• Publisher Details: Cham, Switzerland : Springer
• Publication Date: 2018
• Extent: 1 online resource (xiv, 388 pages), illustrations
• Subjects: 633.1/5233; Corn -- Genetics; Corn -- Genome mapping; Genomes; TECHNOLOGY & ENGINEERING / Agriculture / Agronomy / Crop Science; Plant Genetics and Genomics; Plant Breeding/Biotechnology; Agriculture; Corn -- Genetics; Corn -- Genome mapping; Genomes; Electronic books
• Languages: English
• ISBNs: 9783319974279; 3319974270
• Related ISBNs: 9783319974262; 3319974262
• Notes: Note: Includes bibliographical references.; Note: Description based on online resource; title from digital title page (viewed on December 28, 2018).
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
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