Web microanalysis of big image data. ([2018])

• Record Type: Book
• Further Information: Note: Peter Bajcsy, Joe Chalfoun, Mylene Simon.
• Authors: Bajcsy, Peter; Chalfoun, Joe; Simon, Mylene
• Contents: Intro; Preface; Terminology; Acknowledgments; Disclaimer; Abbreviations; Contents; Chapter 1: Introduction to Big Data Microscopy Experiments; 1.1 Image Processing Pipeline; 1.2 Web Image Processing Pipeline; 1.3 Big Data Microscopy Experiments; 1.4 Motivation of Big Data Microscopy Experiments; 1.5 Range of Applications Leveraging Image Processing Pipelines; 1.6 Challenges of Big Data Microscopy Experiments; 1.7 Considerations Before and After Digital Images Are Acquired; 1.8 Enabling Reproducible Science from Big Data Microscopy Experiments; References. Chapter 2: Functionality of Web Image Processing Pipeline2.1 Deploying and Testing the Web Image Processing Pipeline; 2.1.1 Types of Deployment; 2.1.2 Deployment of Docker Containers; 2.1.3 Deployment Recommendations; 2.1.4 Test Data and Computational Benchmarks; 2.2 Web Image Processing Module; 2.2.1 Web Image Processing Module Processing Functionality; 2.2.2 Description of WIP Module Usage; 2.3 Web Feature Extraction Module; 2.3.1 WFE Module Processing Functionality; 2.3.2 WFE Module Usage; 2.4 Web Statistical Modeling Module; 2.4.1 WSM Module Processing Functionality. 2.4.2 WSM Module Usage2.5 Summary; References; Chapter 3: Example Use Cases; 3.1 Cell Count and Single Cell Detection; 3.1.1 Image Processing Workflow; 3.1.2 Create a New Image Collection; 3.1.3 Stitching of Image Tiles; 3.1.4 Intensity Scaling and Pyramid Building; 3.1.5 Image Assembling; 3.1.6 Segmentation; 3.1.7 Binary Image Labeling; 3.1.8 Feature Extraction and Single Cell Detection; 3.1.9 Discussion; 3.2 Stem Cell Colony Growth Computation; 3.2.1 Image Processing Workflow; 3.2.2 Colony Tracking and Feature Extraction; 3.2.3 Discussion; 3.3 Image Feature Variability and Its Impact. 3.3.1 Image Processing Workflow3.3.2 Image Feature Variability Analysis; 3.3.3 Discussion; 3.4 Summary; References; Chapter 4: Components of Web Image Processing Pipeline; 4.1 Mapping Functionality to Information Technologies; 4.2 The Basics of Client-Server Architecture; 4.2.1 The Role of Each Technology in the Client-Server Architecture; 4.3 The Basics of Web Servers and Browsers; 4.4 The Basics of Communication Protocols in Client-Server Architectures; 4.4.1 Client-Server Communication Using Hypertext Transfer Protocol; 4.4.2 Transmission Control Protocol (TCP). 4.4.3 Message Passing Interface4.4.4 Network File System; 4.5 Designing Interactive User Interfaces in Web Browsers; 4.5.1 Model-View-Controller Design Pattern; 4.5.2 AngularJS for Building Interactive User Interfaces; 4.6 Large Image Visualization and Processing in Web Browsers; 4.7 Representation of Large Images; 4.7.1 Large Image Visualization in Web Browsers; 4.7.2 Image Processing in Web Browsers; 4.8 Managing Images, Pyramids, and Metadata; 4.8.1 Relational Databases; 4.8.2 Non-relational Database; 4.8.3 Java Spring Framework for Web Application Development.
• Publisher Details: Cham : Springer
• Publication Date: 2018
• Copyright Date: 2018
• Extent: 1 online resource, illustrations (some color)
• Subjects: 005.7; Engineering; Big data; Image processing -- Digital techniques; COMPUTERS -- Image Processing; Big data; Image processing -- Digital techniques; Physiological, Cellular and Medical Topics; Computers -- Computer Vision & Pattern Recognition; Mathematics -- Applied; Pattern recognition; Applied mathematics; Optical pattern recognition; Physiology -- Mathematics; Technology & Engineering -- Electronics -- General; Imaging systems & technology; Electronic books
• Languages: English
• ISBNs: 9783319633602; 3319633600
• Related ISBNs: 9783319633596; 3319633597
• Notes: Note: Includes bibliographical references.; Note: Online resource; title from PDF title page (EBSCO, viewed January 31, 2018).
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.