Plant gene regulatory networks : methods and protocols /: methods and protocols. (2017)

• Record Type: Book
• Further Information: Note: Edited by Kerstin Kaufmann, Bernd Mueller-Roeber.
• Editors: (Plant biologist), Kaufmann, Kerstin; Mueller-Roeber, Bernd
• Contents: Preface… Table of Contents… Contributing Authors… 1. From Genes to Networks: Characterizing Gene-Regulatory Interactions in Plants Kerstin Kaufmann and Dijun Chen Part I Experimental Approaches to Study Plant Gene-Regulatory Networks 2. Inducible Promoter Systems for Gene Perturbation Experiments in Arabidopsis Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer 3. Cell Type-Specific Gene Expression Profiling Using Fluorescence-Activated Nuclear Sorting Daniel Slane and Martin Bayer 4. Characterization of Cell Type-Specific DNA Binding Sites of Plant Transcription Factors using Chromatin Immunoprecipitation On Sun Lau 5. Yeast One and Two Hybrid High-Throughput Screenings using Arrayed Libraries Rocío Sánchez-Montesino and Luis Oñate-Sánchez 6. SELEX-Seq: A Method to Determine DNA-Binding Specificities of Plant Transcription Factors Cezary Smaczniak, Gerco C. Angenent and Kerstin Kaufmann 7. Analysis of a Plant Transcriptional Regulatory Network using Transient Expression Systems Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou 8. Analysis of In Vivo Chromatin and Protein Interactions of Arabidopsis Transcript Elongation Factors Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser 9. Characterization of Mediator Complex and its Associated Proteins from Rice Subhasis Samanta and Jitendra Kumar Thakur 10. DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing Sergei A. Filichkin and Molly Megraw 11. In Situ Hi-C Library Preparation for Plants to Study their Three-Dimensional Chromatin Interactions on a Genome-Wide Scale Chang Liu 12. Multiplexed Transcriptional Activation or Repression in Plants using CRISPR-dCas9 Based Systems Levi G. Lowder, Joseph W. Paul III, and Yiping Qi 13. Generation of dTALEs and Libraries of Synthetic TALE-Activated Promoters for Engineering of Gene Regulatory Networks in Plants Tom Schreiber and Alain Tissier Part II Computational Approaches to Study Plant Gene-Regulatory Networks 14. Design of Knowledge Bases for Plant Gene Regulatory Networks Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold 15. AraNet: A Network Biology Server for Arabidopsis thaliana and Other Non-Model Plant Species Tak Lee and Insuk Lee 16. Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development Dijun Chen and Kerstin Kaufmann 17. Predicting Transcription Factor-Binding Sites and their Cognate Transcription Factors using Gene Expression Data Chun-Ping Yu and Wen-Hsiung Li 18. Computational Approaches to Study Gene Regulatory Networks Nooshin Omranian and Zoran Nikoloski 19. Boolean Dynamic Modeling Approaches to Study Plant Gene Regulatory Networks: Integration, Validation and Prediction J. Davila-Velderrain, J.C. Martinez-Garcia, and R.E. Alvarez Buylla 20. ODE-Based Modeling of Complex Regulatory Circuits Daniel D. Seaton 21. Inferring Gene Regulatory Networks in the Arabidopsis Root using a Dynamic Bayesian Network Approach Maria Angels de Luis Balaguer and Rosangela Sozzani.
• Publisher Details: New York : Humana Press
• Publication Date: 2017
• Copyright Date: 2017
• Extent: 1 online resource (350 pages)
• Subjects: 572.8652; Life sciences; Plant genetic regulation; Botany; Science -- Life Sciences -- Botany; Botany & plant sciences
• Languages: English
• ISBNs: 9781493971251
• Related ISBNs: 9781493971244
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.