Bioinformatics in aquaculture. (2017)

• Record Type: Book
• Other Names: Recorded Books, Inc.
• Contents: L ist of Contributors Preface Part 1: BIOINFORMATIC ANALYSIS OF GENOMIC SEQUENCES Chapter 1. Introduction to Linux and command line tools for bioinformatics; Shikai Liu and Zhanjiang Liu Chapter 2. Determining sequence identities: BLAST, Phylogenetic analysis, and syntenic analyses; SenGao, Zihao Yuan, Ning Li, Jiaren Zhang and Zhanjiang Liu Chapter 3. Assembly of genomic sequences generated from next generation sequencing; Ning Li, Xiaozhu Wang and Zhanjiang Liu Chapter 4. Genome Annotation: Determination of the Coding Potential of the genome; Ruijia Wang, LisuiBao, Shikai Liu and Zhanjiang Liu Chapter 5. Analysis of repetitive elements in the genome; LisuiBao and Zhanjiang Liu Chapter 6. Analysis of duplicated genes and multi-gene families; Ruijia Wang and Zhanjiang Liu Chapter 7. Dealing with complex polypoidy genomes: considerations for assembly and annotation of the common carp genome; PengXu, Jiongtang Li and Xiaowen Sun Part 2: BIOINFORMATIC ANALYSIS OF TRANSCRIPTOMIC SEQUENCES Chapter 8. Assembly of RNA-Seq short reads into transcriptome sequences; Jun Yao, Chen Jiang, Chao Li, QifanZeng and Zhanjiang Liu Chapter 9. Analysis of differentially expressed genes and co-expressed genes using RNA-Seq datasets; Chao Li, QifanZeng, Chen Jiang, Jun Yao and Zhanjiang Liu Chapter 10. Gene ontology, enrichment analysis and pathway analysis; Tao Zhou, Jun Yao and Zhanjiang Liu Chapter 11. Genetic analysis using RNA-Seq: Bulk segregant RNA-Seq (BSR-Seq); Jun Yao, Ruijia Wang and Zhanjiang Liu Chapter 12. Analysis of long non-coding RNAs (lncRNAs); Ruijia Wang, LisuiBao, Shikai Liu and Zhanjiang Liu Chapter 13. Analysis of microRNAs and their target genes; Shikai Liu and Zhanjiang Liu Chapter 14. Analysis of allele-specific expression; Yun Li, Ailu Chen and Zhanjiang Liu Chapter 15. Bioinformatic analysis of Epigenetics; Yanghua He and Jiuzhou Song Part 3. BIOINFORMATIC MINING AND GENETIC ANALYSIS OF DNA MARKERS Chapter 16. Bioinformatic mining of microsatellite markers from genomic and transcriptomic sequences; Shaolin Wang, Yanliang Jiang and Zhanjiang Liu Chapter 17. SNP identification from next generation sequencing datasets; QifanZeng, Luyang Sun, Qiang Fu, Shikai Liu and Zhanjiang Liu Chapter 18. SNP array development, genotyping, data analysis, and applications; Shikai Liu, QifanZeng, Xiaozhu Wang and Zhanjiang Liu Chapter 19. Genotyping by sequencing and data analysis: RAD and 2b-RAD sequencing; Shi Wang, JiaLv, Jinzhuang Dou, Qianyun Lu, Lingling Zhang and ZhenminBao Chapter 20. Bioinformatic considerations and approaches for high-density Linkage Mapping in Aquaculture; Yun Li, Shikai Liu, Ruijia Wang, Zhenkui Qin and Zhanjiang Liu Chapter 21. Assignment of chromosomal locations for unassigned SNPs/scaffolds through locus ordering procedure based on linkage disequilibrium (LODE); Mehar Khatkar Chapter 22. Quantitative Trait Locus Mapping in Aquaculture Species: Principles and Practice; Ross Houston Chapter 23. Genome-wide association studies of performance traits; XinGeng, DeguiZhi and Zhanjiang Liu Chapter 24. Gene set analysis of SNP data from genome-wide association studies; Shikai Liu, PengZeng and Zhanjiang Liu Part 4. COMPARATIVE GENOME ANALYSIS Chapter 25. Comparative genomics using CoGe: Hook, line, and sinker: using CoGe tools for catching fish genome evolution; Blake Joyce, Asher Baltzell, Matt Bomhoff and Eric Lyons Part 5. BIOINFORMATIC RESOURCES, DATABASES, AND GENOME BROWSERS Chapter 26. NCBI resources useful for informatics issues in aquaculture; Zihao Yuan, Yujia Yang, Shikai Liu and Zhanjiang Liu Chapter 27. Resources and Bioinformatic Tools in Ensembl; Yulin Jin, Suxu Tan, Jun Yao and Zhanjiang Liu Chapter 28. iAnimal: cyberinfrastructure to support data-driven science; Blake Joyce, Asher Baltzell, Fiona McCarthy, Matt Bomhoff and Eric Lyons Index
• Publisher Details: Malden, MA : Wiley-Blackwell
• Publication Date: 2017
• Extent: 1 online resource
• Subjects: 572.330285; COMPUTERS / Bioinformatics; Computers; Electronic books
• Languages: English
• ISBNs: 9781118782378; 1118782372
• Notes: Note: Title from resource description page (Recorded Books, viewed February 27, 2017).
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.