1. A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data. (December 2018) Authors: Ainscough, Benjamin; Barnell, Erica; Ronning, Peter; Campbell, Katie; Wagner, Alex; Fehniger, Todd; Dunn, Gavin; Uppaluri, Ravindra; Govindan, Ramaswamy; Rohan, Thomas; Griffith, Malachi; Mardis, Elaine; Swamidass, S.; Griffith, Obi Journal: Nature genetics Issue: Volume 50:Number 12(2018) Page Start: 1735 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Accounting for proximal variants improves neoantigen prediction. (January 2019) Authors: Hundal, Jasreet; Kiwala, Susanna; Feng, Yang-Yang; Liu, Connor; Govindan, Ramaswamy; Chapman, William; Uppaluri, Ravindra; Swamidass, S.; Griffith, Obi; Mardis, Elaine; Griffith, Malachi Journal: Nature genetics Issue: Volume 51:Number 1(2019) Page Start: 175 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗