1. Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines. Issue 4 (21st April 2021) Authors: Dozmorov, Mikhail G; Tyc, Katarzyna M; Sheffield, Nathan C; Boyd, David C; Olex, Amy L; Reed, Jason; Harrell, J Chuck Journal: GigaScience Issue: Volume 10:Issue 4(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Issue Volume 46:Issue W1(2018) (5th June 2018) Authors: Simovski, Boris; Kanduri, Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M; Mironov, Andrey A; Quinlan, Aaron R; Sheffield, Nathan C; Trynka, Gosia; Sandve, Geir K Journal: Nucleic acids research Issue: Volume 46:Issue W1(2018) Page Start: W186 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Identity and compatibility of reference genome resources. (14th May 2021) Authors: Stolarczyk, Michał; Xue, Bingjie; Sheffield, Nathan C Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 2(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects. Issue 12 (6th December 2021) Authors: Sheffield, Nathan C; Stolarczyk, Michał; Reuter, Vincent P; Rendeiro, André F Journal: GigaScience Issue: Volume 10:Issue 12(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. LOLAweb: a containerized web server for interactive genomic locus overlap enrichment analysis. Issue Volume 46:Issue W1(2018) (6th June 2018) Authors: Nagraj, V P; Magee, Neal E; Sheffield, Nathan C Journal: Nucleic acids research Issue: Volume 46:Issue W1(2018) Page Start: W194 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments. (23rd November 2021) Authors: Smith, Jason P; Corces, M Ryan; Xu, Jin; Reuter, Vincent P; Chang, Howard Y; Sheffield, Nathan C Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 4(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Refgenie: a reference genome resource manager. Issue 2 (29th January 2020) Authors: Stolarczyk, Michał; Reuter, Vincent P; Smith, Jason P; Magee, Neal E; Sheffield, Nathan C Journal: GigaScience Issue: Volume 9:Issue 2(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗