1. A valence bond model for aqueous Cu(II) and Zn(II) ions in the AMOEBA polarizable force field. Issue 9 (5th December 2012) Authors: Xiang, Jin Yu; Ponder, Jay W. Journal: Journal of computational chemistry Issue: Volume 34:Issue 9(2013) Page Start: 739 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. An optimized charge penetration model for use with the AMOEBA force field. Issue 1 (30th November 2016) Authors: Rackers, Joshua A.; Wang, Qiantao; Liu, Chengwen; Piquemal, Jean-Philip; Ren, Pengyu; Ponder, Jay W. Journal: Physical chemistry chemical physics Issue: Volume 19:Issue 1(2017) Page Start: 276 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Calculating binding free energies of host–guest systems using the AMOEBA polarizable force field. Issue 44 (2nd June 2016) Authors: Bell, David R.; Qi, Rui; Jing, Zhifeng; Xiang, Jin Yu; Mejias, Christopher; Schnieders, Michael J.; Ponder, Jay W.; Ren, Pengyu Journal: Physical chemistry chemical physics Issue: Volume 18:Issue 44(2016) Page Start: 30261 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Computationally driven discovery of SARS-CoV-2 Mpro inhibitors: from design to experimental validation. Issue 13 (7th March 2022) Authors: El Khoury, Léa; Jing, Zhifeng; Cuzzolin, Alberto; Deplano, Alessandro; Loco, Daniele; Sattarov, Boris; Hédin, Florent; Wendeborn, Sebastian; Ho, Chris; El Ahdab, Dina; Jaffrelot Inizan, Theo; Sturlese, Mattia; Sosic, Alice; Volpiana, Martina; Lugato, Angela; Barone, Marco; Gatto, Barbara; Macchia... Journal: Chemical science Issue: Volume 13:Issue 13(2022) Page Start: 3674 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Helix stability of oligoglycine, oligoalanine, and oligo‐β‐alanine dodecamers reflected by hydrogen‐bond persistence. Issue 11 (20th September 2014) Authors: Liu, Chengyu; Ponder, Jay W.; Marshall, Garland R. Journal: Proteins Issue: Volume 82:Issue 11(2014) Page Start: 3043 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short‐range penetration correction up to quadrupoles. Issue 5 (15th February 2016) Authors: Narth, Christophe; Lagardère, Louis; Polack, Étienne; Gresh, Nohad; Wang, Qiantao; Bell, David R.; Rackers, Joshua A.; Ponder, Jay W.; Ren, Pengyu Y.; Piquemal, Jean‐Philip Journal: Journal of computational chemistry Issue: Volume 37:Issue 5(2016) Page Start: 494 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields. Issue 4 (5th December 2017) Authors: Lagardère, Louis; Jolly, Luc-Henri; Lipparini, Filippo; Aviat, Félix; Stamm, Benjamin; Jing, Zhifeng F.; Harger, Matthew; Torabifard, Hedieh; Cisneros, G. Andrés; Schnieders, Michael J.; Gresh, Nohad; Maday, Yvon; Ren, Pengyu Y.; Ponder, Jay W.; Piquemal, Jean-Philip Journal: Chemical science Issue: Volume 9:Issue 4(2018) Page Start: 956 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗