1. Assessment of 13 in silico pathogenicity methods on cancer-related variants. (June 2022) Authors: Yazar, Metin; Ozbek, Pemra Journal: Computers in biology and medicine Issue: Volume 145(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles. Issue 3 (17th February 2018) Authors: Serçinoğlu, Onur; Ozbek, Pemra Journal: Journal of biomolecular structure & dynamics Issue: Volume 36:Issue 3(2018) Page Start: 724 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles. (February 2020) Authors: Bunsuz, Asuman; Serçinoğlu, Onur; Ozbek, Pemra Journal: Computational biology and chemistry Issue: Volume 84(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study. (June 2016) Authors: Ozbek, Pemra Journal: Computational biology and chemistry Issue: Volume 62(2016) Page Start: 12 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study. (June 2016) Authors: Ozbek, Pemra Journal: Computational biology and chemistry Issue: Volume 62(2016) Page Start: 12 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+, K+-ATPases. (6th December 2022) Authors: Mohammadi, Shabnam; Özdemir, Halil İbrahim; Ozbek, Pemra; Sumbul, Fidan; Stiller, Josefin; Deng, Yuan; Crawford, Andrew J; Rowland, Hannah M; Storz, Jay F; Andolfatto, Peter; Dobler, Susanne Editors: Malik, Harmit Journal: Molecular biology and evolution Issue: Volume 39:Number 12(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. GRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations. Issue Volume 46:Issue W1(2018) (25th May 2018) Authors: Serçinoğlu, Onur; Ozbek, Pemra Journal: Nucleic acids research Issue: Volume 46:Issue W1(2018) Page Start: W554 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study. Issue 13 (2nd September 2019) Authors: Bingöl, Elif Naz; Serçinoğlu, Onur; Ozbek, Pemra Journal: Journal of biomolecular structure & dynamics Issue: Volume 37:Issue 13(2019) Page Start: 3456 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗