1. Boosting gene expression clustering with system-wide biological information: a robust autoencoder approach. (7th February 2020) Authors: Cui, Hongzhu; Zhou, Chong; Dai, Xinyu; Liang, Yuting; Paffenroth, Randy; Korkin, Dmitry Journal: International journal of computational biology and drug design Issue: Volume 13:Number 1(2020) Page Start: 98 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions. Issue 11 (23rd August 2013) Authors: Moretti, Rocco; Fleishman, Sarel J.; Agius, Rudi; Torchala, Mieczyslaw; Bates, Paul A.; Kastritis, Panagiotis L.; Rodrigues, João P. G. L. M.; Trellet, Mikaël; Bonvin, Alexandre M. J. J.; Cui, Meng; Rooman, Marianne; Gillis, Dimitri; Dehouck, Yves; Moal, Iain; Romero‐Durana, Miguel; Perez‐Cano, L... Journal: Proteins Issue: Volume 81:Issue 11(2013) Page Start: 1980 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Genome-wide prediction of bacterial effector candidates across six secretion system types using a feature-based statistical framework. Issue 1 (December 2018) Authors: Dhroso, Andi; Eidson, Samantha; Korkin, Dmitry Journal: Scientific reports Issue: Volume 8:Issue 1(2018) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Incorporation of protein binding effects into likelihood ratio test for exome sequencing data. Issue 7 (October 2016) Authors: Zhang, Dongni; Cui, Hongzhu; Korkin, Dmitry; Wu, Zheyang Journal: BMC proceedings Issue: Volume 10:Issue 7(2016) Page Start: 275 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Multilayer View of Pathogenic SNVs in Human Interactome through In Silico Edgetic Profiling. Issue 18 (14th September 2018) Authors: Cui, Hongzhu; Zhao, Nan; Korkin, Dmitry Journal: Journal of molecular biology Issue: Volume 430:Issue 18(2018)Part A Page Start: 2974 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. PHILM2Web: A high-throughput database of macromolecular host–pathogen interactions on the Web. (30th June 2022) Authors: Le, Tuan-Dung; Nguyen, Phuong D; Korkin, Dmitry; Thieu, Thanh Journal: Database Issue: Volume 2022(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Phytonematode peptide effectors exploit a host post‐translational trafficking mechanism to the ER using a novel translocation signal. Issue 1 (22nd July 2020) Authors: Wang, Jianying; Dhroso, Andi; Liu, Xunliang; Baum, Thomas J.; Hussey, Richard S.; Davis, Eric L.; Wang, Xiaohong; Korkin, Dmitry; Mitchum, Melissa G. Journal: New phytologist Issue: Volume 229:Issue 1(2021) Page Start: 563 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance . Issue 3 (14th September 2017) Authors: Kandoth, Pramod K.; Liu, Shiming; Prenger, Elizabeth; Ludwig, Andrew; Lakhssassi, Naoufal; Heinz, Robert; Zhou, Zhou; Howland, Amanda; Gunther, Joshua; Eidson, Samantha; Dhroso, Andi; LaFayette, Peter; Tucker, Donna; Johnson, Sarah; Anderson, James; Alaswad, Alaa; Cianzio, Silvia R.; Parrott, Way... Journal: Plant physiology Issue: Volume 175:Issue 3(2017) Page Start: 1370 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. The yeast protein interaction network has a capacity for self‐organization. (1st July 2014) Authors: Dhroso, Andi; Korkin, Dmitry; Conant, Gavin C. Journal: FEBS journal Issue: Volume 281:Number 15(2014) Page Start: 3420 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Unravelling psychiatric heterogeneity and predicting suicide attempts in women with trauma-related dissociation using artificial intelligence. Issue 2 (19th December 2022) Authors: Srinivasan, Suhas; Harnett, Nathaniel G.; Zhang, Liang; Dahlgren, M. Kathryn; Jang, Junbong; Lu, Senbao; Nephew, Benjamin C.; Palermo, Cori A.; Pan, Xi; Eltabakh, Mohamed Y.; Frederick, Blaise B.; Gruber, Staci A.; Kaufman, Milissa L.; King, Jean; Ressler, Kerry J.; Winternitz, Sherry; Korkin, Dm... Journal: European journal of psychotraumatology Issue: Volume 13:Issue 2(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗