1. A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data. (December 2018) Authors: Ainscough, Benjamin; Barnell, Erica; Ronning, Peter; Campbell, Katie; Wagner, Alex; Fehniger, Todd; Dunn, Gavin; Uppaluri, Ravindra; Govindan, Ramaswamy; Rohan, Thomas; Griffith, Malachi; Mardis, Elaine; Swamidass, S.; Griffith, Obi Journal: Nature genetics Issue: Volume 50:Number 12(2018) Page Start: 1735 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Accounting for proximal variants improves neoantigen prediction. (January 2019) Authors: Hundal, Jasreet; Kiwala, Susanna; Feng, Yang-Yang; Liu, Connor; Govindan, Ramaswamy; Chapman, William; Uppaluri, Ravindra; Swamidass, S.; Griffith, Obi; Mardis, Elaine; Griffith, Malachi Journal: Nature genetics Issue: Volume 51:Number 1(2019) Page Start: 175 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer. Issue 1 (December 2018) Authors: Griffith, Obi; Spies, Nicholas; Anurag, Meenakshi; Griffith, Malachi; Luo, Jingqin; Tu, Dongsheng; Yeo, Belinda; Kunisaki, Jason; Miller, Christopher; Krysiak, Kilannin; Hundal, Jasreet; Ainscough, Benjamin; Skidmore, Zachary; Campbell, Katie; Kumar, Runjun; Fronick, Catrina; Cook, Lisa; Snider, ... Journal: Nature communications Issue: Volume 9:Issue 1(2018) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Checkpoint blockade-induced CD8+ T cell differentiation in head and neck cancer responders. Issue 1 (20th January 2022) Authors: Zhou, Liye; Zeng, Zexian; Egloff, Ann Marie; Zhang, Fan; Guo, Fei; Campbell, Katie M; Du, Peter; Fu, Jingxin; Zolkind, Paul; Ma, Xiaojing; Zhang, Zhe; Zhang, Yi; Wang, Xiaoqing; Gu, Shengqing; Riley, Rachel; Nakahori, Yasutaka; Keegan, Joshua; Haddad, Robert; Schoenfeld, Jonathan D; Griffith, Obi Journal: Journal for immunotherapy of cancer Issue: Volume 10:Issue 1(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. High-performance web services for querying gene and variant annotation. Issue 1 (December 2016) Authors: Xin, Jiwen; Mark, Adam; Afrasiabi, Cyrus; Tsueng, Ginger; Juchler, Moritz; Gopal, Nikhil; Stupp, Gregory; Putman, Timothy; Ainscough, Benjamin; Griffith, Obi; Torkamani, Ali; Whetzel, Patricia; Mungall, Christopher; Mooney, Sean; Su, Andrew; Wu, Chunlei Journal: Genome biology Issue: Volume 17:Issue 1(2016) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. OMIC-13. THE ROLE OF COPY NUMBER ALTERATIONS IN PREDICTING SURVIVAL AND INFLUENCING TREATMENT OF CHILDHOOD BRAIN TUMORS. (1st June 2021) Authors: Freshour, Sharon; Fisk, Bryan; Miller, Christopher; Griffith, Obi; Griffith, Malachi; Rubin, Joshua Journal: Neuro-oncology Issue: Volume 23(2021)Supplement 1 Page Start: i40 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. PVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens. Issue 1 (December 2016) Authors: Hundal, Jasreet; Carreno, Beatriz; Petti, Allegra; Linette, Gerald; Griffith, Obi; Mardis, Elaine; Griffith, Malachi Journal: Genome medicine Issue: Volume 8:Issue 1(2016) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗