1. A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. Issue 1 (December 2016) Authors: Fotuhi Siahpirani, Alireza; Ay, Ferhat; Roy, Sushmita Journal: Genome biology Issue: Volume 17:Issue 1(2016) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Analysis methods for studying the 3D architecture of the genome. Issue 1 (December 2015) Authors: Ay, Ferhat; Noble, William Journal: Genome biology Issue: Volume 16:Issue 1(2015) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. EPEN-04. ONCOGENIC 3D TUMOR GENOME ORGANIZATION IDENTIFIES NEW THERAPEUTIC TARGETS IN EPENDYMOMA. (4th December 2020) Authors: Okonechnikov, Konstantin; Hübner, Jens-Martin; Chapman, Owen; Chakraborty, Abhijit; Pagadala, Meghana; Bump, Rosalind; Chandran, Sahaana; Kraft, Katerina; Hidalgo, Rocio Acuna; Mundlos, Stefan; Wechsler-Reya, Robert; Juarez, Edwin F; Coufal, Nicole; Levy, Michael; Crawford, John; Pajtler, Kristia... Journal: Neuro-oncology Issue: Volume 22(2020)Supplement 3 Page Start: iii308 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. EPEN-18. Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma. (3rd June 2022) Authors: Okonechnikov, Konstantin; Camgöz, Aylin; Park, Donglim Esther; Chapman, Owen; Hübner, Jens-Martin; Jenseit, Anne; Chakraborty, Abhijit; Pagadala, Meghana; Bump, Rosalind; Chandran, Sahaana; Kraft, Katherina; Hidalgo, Rocio Acuna; Reid, Derek; Juarez, Edwin F; Robinson, James T; Pajtler, Kristian ... Journal: Neuro-oncology Issue: Volume 24(2022)Supplement 1 Page Start: i42 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. GENE-15. TARGETING OF EPENDYMOMA AS INFORMED BY ONCOGENIC 3D GENOME ORGANIZATION. (11th November 2019) Authors: Okonechnikov, Konstantin; Hübner, Jens-Martin; Chapman, Owen; Chakraborty, Abhijit; Bump, Rosalind; Chandran, Sahaana; Kraft, Katerina; Acuna Hidalgo, Rocio; Mundlos, Stefan; Coufal, Nicole; Levy, Michael; Crawford, John; Ay, Ferhat; Mesirov, Jill; Pajtler, Kristian; Dixon, Jesse; Pfister, Stefan... Journal: Neuro-oncology Issue: Volume 21(2019)Supplement 6 Page Start: vi100 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum. (13th November 2014) Authors: Ay, Ferhat; Bunnik, Evelien M.; Varoquaux, Nelle; Vert, Jean‐Philippe; Noble, William Stafford; Le Roch, Karine G. Journal: BioEssays Issue: Volume 37:Number 2(2015:Feb.) Page Start: 182 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. The role of 3D genome organization in disease: From compartments to single nucleotides. (June 2019) Authors: Chakraborty, Abhijit; Ay, Ferhat Journal: Seminars in cell & developmental biology Issue: Volume 90(2019) Page Start: 104 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗